ATP-grasp explained

Symbol:ATP-grasp
ATP-grasp domain
Interpro:IPR013815
Pfam:PF02222
Pfam Clan:CL0179
Ecod:206.1.3

In molecular biology, the ATP-grasp fold is a unique ATP-binding protein structural motif made of two α+β subdomains that "grasp" a molecule of ATP between them. ATP-grasp proteins have ATP-dependent carboxylate-amine/thiol ligase activity.[1] [2]

Structure

Proteins of the ATP-grasp family have an overall structural configuration organised into three domains referred to as the N-terminal domain (or A-domain), the central domain (or B-domain), and the C-terminal domain (or C-domain).

Function

ATP-grasp enzymes catalyse the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule. The reactions typically involve formation of acylphosphate intermediates. These enzymes are involved in various metabolic pathways including purine biosynthesis, fatty acid synthesis, and gluconeogenesis.[3]

Examples of proteins containing this domain

Evolution and distribution

The ATP-grasp fold is evolutionarily conserved across different enzyme families and its presence is ubiquitous across prokaryotes and eukaryotes.

Use in research

Researchers have developed several types of inhibitors for these enzymes, including mechanism-based inhibitors, ATP-competitive inhibitors, and non-competitive inhibitors. Some ATP-grasp enzymes are being studied as potential targets for antibiotics and anti-obesity drugs.

External links

Notes and References

  1. Eroglu B, Powers-Lee SG . Mutational analysis of ATP-grasp residues in the two ATP sites of Saccharomyces cerevisiae carbamoyl phosphate synthetase . Archives of Biochemistry and Biophysics . 407 . 1 . 1–9 . November 2002 . 12392708 . 10.1016/s0003-9861(02)00510-6 .
  2. Fawaz MV, Topper ME, Firestine SM . The ATP-grasp enzymes . Bioorganic Chemistry . 39 . 5–6 . 185–191 . December 2011 . 21920581 . 3243065 . 10.1016/j.bioorg.2011.08.004 .
  3. Galperin MY, Koonin EV . A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity . Protein Science . 6 . 12 . 2639–2643 . December 1997 . 9416615 . 2143612 . 10.1002/pro.5560061218 .